Journal: PLoS ONE

Article Title: Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

doi: 10.1371/journal.pone.0108522

Figure Lengend Snippet: . Neighbour-joining tree based on 16S rRNA gene sequences showing the relationship of Micromonospora species and other members of the family Micromonosporaceae . Strains isolated from plant related sources are indicated by a green arrow.

Article Snippet: The genomic characteristics of strain Lupac 08 and three additional Micromonospora genomes deposited in the public databases including Micromonospora sp. strain L5 isolated from root nodules of Casuarina equisetifolia ; M. aurantiaca ATCC 27029 T and Micromonospora sp. ATCC 39149 isolated from soil ( ) were compared.

Techniques: Isolation

Journal: PLoS ONE

Article Title: Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

doi: 10.1371/journal.pone.0108522

Figure Lengend Snippet: Circles displayed from the outside in: 1. Cellulose-binding genes in black, chitin-binding genes in red, lectin genes in lavender blue; 2. Genome coordinates; 3. MW; 4. GC% (linear range between 65 and 80%); 5. Regions of genome plasticity according to the RGP_Finder method (Mage platform) based on synteny breaks between the query genome (Lupac 08) and close genomes ( Micromonospora aurantiaca ATCC 27029 T , Micromonospora sp. L5 and Verrucosispora maris AB-18-032 T ) correlated with HGT features (tRNA hotspot, DNA repeats, mobility genes), and compositional bias and GC deviation computation. C1 to C15 indicate the position of the 15 clusters of genes coding for secondary metabolites of .

Article Snippet: The genomic characteristics of strain Lupac 08 and three additional Micromonospora genomes deposited in the public databases including Micromonospora sp. strain L5 isolated from root nodules of Casuarina equisetifolia ; M. aurantiaca ATCC 27029 T and Micromonospora sp. ATCC 39149 isolated from soil ( ) were compared.

Techniques: Binding Assay

Journal: PLoS ONE

Article Title: Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

doi: 10.1371/journal.pone.0108522

Figure Lengend Snippet: Comparative genomic characteristics of M. lupini Lupac 08 and three Micromonospora genomes publicly available.

Article Snippet: The genomic characteristics of strain Lupac 08 and three additional Micromonospora genomes deposited in the public databases including Micromonospora sp. strain L5 isolated from root nodules of Casuarina equisetifolia ; M. aurantiaca ATCC 27029 T and Micromonospora sp. ATCC 39149 isolated from soil ( ) were compared.

Techniques:

Journal: PLoS ONE

Article Title: Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

doi: 10.1371/journal.pone.0108522

Figure Lengend Snippet: Venn diagram showing the number of clusters of orthologous genes, shared and unique, between M. lupini Lupac 08, Micromonospora sp. L5 and M. aurantiaca ATCC 27029 T .

Article Snippet: The genomic characteristics of strain Lupac 08 and three additional Micromonospora genomes deposited in the public databases including Micromonospora sp. strain L5 isolated from root nodules of Casuarina equisetifolia ; M. aurantiaca ATCC 27029 T and Micromonospora sp. ATCC 39149 isolated from soil ( ) were compared.

Techniques: